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BioPerl Function files
index index of files
dna files
mmp3.dna
mmp10.dna
mmp11.dna
pccx1.dna
protein files
mmp3.aa
mmp10.aa
mmp11.aa
pccx1.aa
znf148.aa
znf148.dna
program files
cat_dna.pl concatenate sequences
count.pl count nucleotides of dna
count_bench.pl benchmark example using Benchmark
dna2rna.pl transcribe dna to rna
motif.pl search files for motifs
print_dna.pl print dna
read_file.pl read files
revcom.pl reverse complement dna
testio.pl test io: sip, slurp, array
time_count.pl shows time( ) is insufficient for benchmarking
chapter examples
bioref.pl perl references example reading bio data
biodata.txt text read by bioref.pl
palindrome.pl simple palindrome testing
testch2.pl simple examples of transliteration
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