BioPerl Summary files
index list of Summary files
dna data
At.dna
Ce.dna
Dm.dna
Os.dna
Annotated data
At.ann Gene annotation by introns exons
Ce.ann
Dm.ann
Os.ann
Perl Object Libraries
BPlite.pm Blast Formated Output
FAlite.pm FASTA Formated Output
GBlite.pm GenBank Formated Output
Perl scripting programs
codon.pl codon hash output
mpblast.pl calls multiple blast searches
plotBlast.pl quick blast plotting
tregex.pl regular expression searching
xblast.pl blasting utility
html programs
aha.html ace db formating utility
mygenbank.html sql db format for GenBank
Research Studies
korf-cshl2002tuning.pdf tuning Blast runs for species
SerialPoster.pdf more effective Blast strategies