Perl for Bio Informatics I files

Book Errata file

errata.txt.html

Perl for Bio Informatics I Chapter files

Overview Chapter files

dups.txt.html index.html library.gb.html no_dups.pl.html pccx1.gb.html print_all.pl.html print_all2.pl.html print_all3.pl.html print_all4.pl.html see_env.pl.html see_env2.pl.html testch1.pl.html

Functions Chapter files

biodata.txt.html bioref.pl.html cat_dna.pl.html count.pl.html count_bench.pl.html dna2rna.pl.html index.html mmp10.aa.html mmp10.dna.html mmp11.aa.html mmp11.dna.html mmp3.aa.html mmp3.dna.html motif.pl.html palindromes.pl.html pccx1.aa.html pccx1.dna.html print_dna.pl.html read_file.pl.html revcom.pl.html testch2.pl.html testio.pl.html time_count.pl.html znf148.aa.html znf148.dna.html

Program Chapter files

find_count.pl.html index.html insulin.dna.html mmp10.dna.html mmp11.dna.html mmp3.dna.html NM_021964fragment.pep.html pccx1.dna.html polya.pl.html seqfun.pl.html simple_test.pl.html smallfile.txt.html testch3.pl.html znf148.dna.html

Library Chapter files

BioLibeg.pm.html bogus.pl.html find_count.pl.html find_count2.pl.html index.html NM_021964fragment.pep.html perlop.doc.html perlvar.doc.html second.pep.html seqfun.pl.html SeqFun.pm.html SeqFun2.pm.html smallfile.txt.html test_biolibeg.pl.html

library test files

biolibeg.t.html seqfun.t.html seqfun2.t.html

Objects Chapter files

bless_Sequence.pl.html find_count.pl.html index.html mmp10.dna.html mmp11.dna.html mmp3.dna.html NM_021964fragment.pep.html pccx1.aa.html pccx1.dna.html Seq.pm.html Seq2.pm.html seqfun.pl.html SeqFun.pm.html Sequence.pm.html sequence.txt.html sequence1b.txt.html sequence2b.txt.html znf148.dna.html

Objects test files

seq.t.html seq2.t.html seqfun.t.html sequence.t.html

Object Oriented Library Chapter files

find_count.pl.html GetterSetter.pm.html index.html NM_021964fragment.pep.html overload_autoload.pl.html pccx1.dna.html Seq.pm.html seq.t.html seqfun.pl.html SeqFun.pm.html TwoBio.pm.html

Object Oriented test files

gettersetter.t.html seq.t.html seqfun.t.html twobio.t.html

Workflow Chapter files

filter_cxxc.pl.html filter_gc.pl.html filter_rt.pl.html index.html library.gb.html names.pl.html process.pl.html read.pl.html SeqFun.pm.html start.pl.html stone.pl.html write.pl.html

Workflow test files

seqfun.t.html

Summary Chapter files

aha.html At.ann.html At.dna.html BPlite.pm.html Ce.ann.html Ce.dna.html codon.pl.html DataBrowser.pm.html Dm.ann.html Dm.dna.html FAlite.pm.html GBlite.pm.html index.html korf-cshl2002tuning.pdf mpblast.pl.html mygenbank.html Os.ann.html Os.dna.html plotBlast.pl.html SerialPoster.pdf test1.pl.html tregex.pl.html xblast.pl.html

Discussion files

Algorithm Discussion files

Hg17-tRNAs2.fa.html nassinov.pl.html nassinovFA.pl.html rna1.data.html

Bio Function Discussion files

biodata.txt.html bioref.pl.html calc_temp.pl.html enzyme_list.txt.html index.txt.html motif_search.pl.html parse-genbank.pl.html querydb.pl.html read_seq.pl.html revcom.pl.html seq_read.pl.html simple.fasta.html test.dna.html test_restriction_enzyme.pl.html

Methods Discussion files

map.pl.html

Objects Discussion files

cleave.pl.html

Programs Discussion files

levenshtein.pl.html

Scripts Discussion files

compound_interest.pl.html count_words.pl.html demo_valuering.pl.html facts.pl.html pathgrep.pl.html slice_array.pl.html ValueRing.pm.html

Technique Discussion files

no_files_here.txt.html

Workflow Discussion files

BioFunctions.pm.html dna2rna.pl.html find_polya.pl.html read.pl.html remove_polya.pl.html

Appendix Files

Boulder Appendix files

filter_cxxc.pl.html library.gb.html readme.txt.html

Functions Demystified files

FunLib.pm.html FunLib.pm_plain.html funlib.t.html

Objects Demystified files

BaseObj.pm.html BaseObj.pm_plain.html baseobj.t.html Inherit.pm.html Inherit.pm_plain.html showbaseobj.pl.html

POD Appendix files

library.pod.html program.pod.html
Be still as a mountain; move as a great river.
DavidScott@MovementWithin.com